CDS

Accession Number TCMCG002C08430
gbkey CDS
Protein Id XP_020088516.1
Location join(2316301..2316413,2316492..2316636,2316912..2316986,2317404..2317493,2317618..2317697,2318066..2318135,2318233..2318318,2318876..2318945,2319084..2319179,2319922..2320027,2320834..2320880,2320971..2321054,2321132..2321185,2321497..2321597,2321997..2322087,2322763..2322927,2323419..2323508,2323618..2323689,2324190..2324288,2324413..2324499,2324769..2324822,2325040..2325119,2325398..2325545)
Gene LOC109710394
GeneID 109710394
Organism Ananas comosus

Protein

Length 700aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA371634
db_source XM_020232927.1
Definition probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 [Ananas comosus]

EGGNOG-MAPPER Annotation

COG_category A
Description Helicase conserved C-terminal domain
KEGG_TC -
KEGG_Module M00355        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K13117        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTCAGTTTTGGAGACCGGGATCGGAGCGGCCGCGCACGCGCCTCATCGACGACGACGAGGGCGGCGTCCTCTTCGTCCCCGCCCCTCCCTCCTCCTCCTCCTCCTCCGGGTTTGGGCACTCGAGCTTGGAGAGGCAGAGGAAGCGGCTCCCCGTGTACAAGCACCGCGACGCCGTATTGTACCTGGTGGAGCATCATTCCACCACCATAGTAGTTGGAGAGACGGGGAGTGGCAAGACCACTCAGATTCCGCAGTATCTTAAGGAGGCAGGTTGGGCCGAGGGTGGTCGAGTTATAGCTTGTACTCAACCGAGGCGATTGGCTGTTCAGTCTGTTGCGGCACGTGTAGCTGAAGAGATGGGTGTCAAGCTTGGAGAAGAAGTTGGTTATACCATTCGTTTTGAAGATGTGACAAATCCGGGTGTAACCATGATCAAATTTCTCACTGACGGGGTATTGGTTAGAGAAATGATGGATGATCCTCTTCTGACCAAATATAGCATTATAATGGTGGATGAGGCACATGAAAGATCCCTCTCAACAGACATGTTACTAGGACTCCTGAAAAAGATCCAACGGCGGAGACCTGATTTGCGTATCATCATTTCATCTGCAACCATTGAAGCAAAATCCATGTCAAACTTCTTCAATATTAGAAGGAAAAGTCTTGCTCAGGATGCCGAAGATTGTGCTCCTAATAAGCAGCCAGCTATACTTTCTGTTGAAGGTAAAGGGTATGCTGTGGAAATTCATTATGTTGAGGAGCCTGTCTCTGATTACCTGCAAGCTGCTGTAGATACTGTGCTTTTGATTCATGAAAAGGAACCACCAGGCGATATTCTGGTCTTCCTTACAGGTCAAGATGATATTGATGCCGCTGTGAAATTGCTTACAGGACATGGTCAGCAGTACGGCAGTCACTATTCGGACTTACTGGTTTTGCCACTGTACTCTGGGCTTCCACGCGGAGAACAGGACCTCATTTTTACTCCCACCCCAAAGGGAAAGAGGAAAGTTGTGATATCAACAAATATTGCTGAGACATCATTGACTTTGGAGGGAGTAGCGTACGTTGTTGATAGTGGGTTCTCAAAGCAGCGCTTTTATAATCCGATTTCTGATATCGAAAATCTGGTGGTGGTACCAATATCAAAGGCTTCTGCACGGCAAAGGGCTGGGAGAGCTGGAAGAGTACAACCTGGGAAGTGTTATAGGCTCTACACAGAAGAATATTACCTCAAGGAAATGTCTCCAGAAGGAATCCCAGAGATGCAACGATCAAACCTCGTCTCGTGCATAATACAACTAAAGGCCTTAGGTATAGATAATATATTAGGTTTTGATTGGATAGCTTCTCCAGCACCAGAGGCGATGATACGAGCTCTTGAAATTCTGTACTCTCTTGGTATTATCGATGAAGATGCAAAACTTACGTCACCCACCGGCTTTCAAGTTGCGGAGATTCCATTAGACCCTATGATCTCCAAAATGATCCTATCAGCGAATGATTTTGGGTGTACTGAGGAGATAATAACTATAGCGGCAGTTTTATCAGTTCAGTCCATATGGGTCTCCATTAGGGGAGTGAAGAAGGAATTTGATGAAGCAAAGCTGCGTTTTGCTGCCGCCGAGGGAGATCATGTTACATTTCTGAACATCTACAGAGGGTTTCTTCAGTCTGGAAAATCTTCGCAGTGGTGCTACAAAAACTTTATAAACTACCACGCTATGAAGAAGGTTGTTGACATCAAGGAACAACTCCACAATCTAATGAGGCGGCTAGGCATAGCAGTAAAATCATGTGATAGAGATATGCAGGCGGTGAGGAAGGCTATTATTGCTGGCTTTTTCGCCCATGCATGTCACTTGGAGGAATACAGTCAAAATGGAATGTACAAGACAATTAGGAGCTCGCAGGAAGTGTACATCCATCCATCTTCTGTGCTCTTCAGGGTTAATCCAAAGTGGGTCGTCTACCATTCGCTCGTTTCAACCGACAAACACTACATGCGCAACGTCATCGCCATCGACCCATCATGGCTTACTGAAGCTGCACCACATTTCTATCAGCTCAGGCAACCAAACCCGATCCCCTACTGA
Protein:  
MSQFWRPGSERPRTRLIDDDEGGVLFVPAPPSSSSSSGFGHSSLERQRKRLPVYKHRDAVLYLVEHHSTTIVVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVAARVAEEMGVKLGEEVGYTIRFEDVTNPGVTMIKFLTDGVLVREMMDDPLLTKYSIIMVDEAHERSLSTDMLLGLLKKIQRRRPDLRIIISSATIEAKSMSNFFNIRRKSLAQDAEDCAPNKQPAILSVEGKGYAVEIHYVEEPVSDYLQAAVDTVLLIHEKEPPGDILVFLTGQDDIDAAVKLLTGHGQQYGSHYSDLLVLPLYSGLPRGEQDLIFTPTPKGKRKVVISTNIAETSLTLEGVAYVVDSGFSKQRFYNPISDIENLVVVPISKASARQRAGRAGRVQPGKCYRLYTEEYYLKEMSPEGIPEMQRSNLVSCIIQLKALGIDNILGFDWIASPAPEAMIRALEILYSLGIIDEDAKLTSPTGFQVAEIPLDPMISKMILSANDFGCTEEIITIAAVLSVQSIWVSIRGVKKEFDEAKLRFAAAEGDHVTFLNIYRGFLQSGKSSQWCYKNFINYHAMKKVVDIKEQLHNLMRRLGIAVKSCDRDMQAVRKAIIAGFFAHACHLEEYSQNGMYKTIRSSQEVYIHPSSVLFRVNPKWVVYHSLVSTDKHYMRNVIAIDPSWLTEAAPHFYQLRQPNPIPY